R-universe - thomascarroll (Thomas Carroll)

Herper - The Herper package is a simple toolset to install and manage conda packages and environments from R

Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.

Last updated

infrastructuresoftware

6.41 score 5 stars 104 scripts 338 downloads

ChIPQC - Quality metrics for ChIPseq data

Quality metrics for ChIPseq data.

Last updated

sequencingchipseqqualitycontrolreportwriting

5.06 score 231 scripts 836 downloads

tracktables - Build IGV tracks and HTML reports

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Last updated

sequencingreportwriting

4.06 score 58 scripts 600 downloads