1 Introduction | 2 Example 1: ENCODE data set with problematic samples | 3 Example 2: ER binding in tamoxifen resistant data set | 4 Example 3: Single sample assessment | 5 Customising QC plots | 6 Using ChIPQC and DiffBind together | 7 Acknowledgements | 8 Session Info

Installation | Install Conda packages with install_CondaTools. | Install R package dependencies with install_CondaSysReqs. | Acknowledgements | Session Information

1 The tracktables package | 2 Creating IGV sessions and HTML reports using tracktables | 3 Note on the use of relative paths | 4 Session Information